
To run the calibration of the spatial model:

1. The 20 initial function evaluations for Bayesian optiomization routine can be computed using run_lhs.m (these evaluations are also precomputed in the subfolder LHSsample_20).

2. A proper input for Bayesian optimization routine can be constructed using collect_lhsamples.m

3. Bayesian optimization can be run using the function calibrate_spatial_model.m

4. The wild type and petite colonies can be simulated using simulate_colony.m (the optimal parameters are automatically collected from the optimization result file).


